SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
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Feb 9, 2026 - Python
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spatial-domains
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Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
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Sep 18, 2026 - Python
MCP server for spatial transcriptomics analysis through natural language interfaces.
visualization python machine-learning bioinformatics genomics computational-biology pytorch spatial-analysis single-cell deconvolution spatial-transcriptomics scanpy spatial-domains squidpy llm-agent cell-communication claude-desktop agentic-ai model-context-protocol mcp-server
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Oct 20, 2026 - Python
Multi-slice Spatial Transcriptome Domain Analysis.
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Dec 13, 2024 - R
Degree-preserving Graph Evidence Aggregation and Reweighting (Degree-GEAR) for label-free spatial domain identification with frozen biomedical language models, scanpy, and Leiden
bioinformatics clustering transformers pytorch leiden spatial-transcriptomics scanpy anndata spatial-domains biomedical-nlp
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Oct 11, 2026 - Python
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